NerdWallet compared more than a dozen accounting software products. Aplos is our top choice for most nonprofits because it’s built with their needs in mind, letting you avoid potentially costly integrations.
Hillary Crawford writes about small-business software at NerdWallet and is certified in QuickBooks Online and web design. Her previous roles include news writer and associate West Coast editor at Bustle Digital Group, where she helped shape news and tech coverage. She's appeared on Cheddar News and also worked as a policy contributor for GenFKD. Hillary earned a bachelor's degree with high honors in political science from the University of Michigan.
Email: <a href="mailto:hcrawford@nerdwallet.com">hcrawford@nerdwallet.com</a>.
Hillary Crawford writes about small-business software at NerdWallet and is certified in QuickBooks Online and web design. Her previous roles include news writer and associate West Coast editor at Bustle Digital Group, where she helped shape news and tech coverage. She's appeared on Cheddar News and also worked as a policy contributor for GenFKD. Hillary earned a bachelor's degree with high honors in political science from the University of Michigan.
Email: <a href="mailto:hcrawford@nerdwallet.com">hcrawford@nerdwallet.com</a>.
Sally Lauckner has over a decade of experience in print and online journalism. Before joining NerdWallet, Sally was the editorial director at Fundera, where she built and led a team focused on small-business content. Her prior experience includes two years as a senior editor at SmartAsset, where she edited a wide range of personal finance content, and five years at the AOL Huffington Post Media Group, where she held a variety of editorial roles. She has a master's in journalism from New York University and a bachelor's in English and history from Columbia University. Email: slauckner@nerdwallet.com.
Sally Lauckner has over a decade of experience in print and online journalism. Before joining NerdWallet, Sally was the editorial director at Fundera, where she built and led a team focused on small-business content. Her prior experience includes two years as a senior editor at SmartAsset, where she edited a wide range of personal finance content, and five years at the AOL Huffington Post Media Group, where she held a variety of editorial roles. She has a master's in journalism from New York University and a bachelor's in English and history from Columbia University. Email: slauckner@nerdwallet.com.
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Hillary Crawford writes about small-business software at NerdWallet and is certified in QuickBooks Online and web design. Her previous roles include news writer and associate West Coast editor at Bustle Digital Group, where she helped shape news and tech coverage. She's appeared on Cheddar News and also worked as a policy contributor for GenFKD. Hillary earned a bachelor's degree with high honors in political science from the University of Michigan.
Email: <a href="mailto:hcrawford@nerdwallet.com">hcrawford@nerdwallet.com</a>.
Hillary Crawford writes about small-business software at NerdWallet and is certified in QuickBooks Online and web design. Her previous roles include news writer and associate West Coast editor at Bustle Digital Group, where she helped shape news and tech coverage. She's appeared on Cheddar News and also worked as a policy contributor for GenFKD. Hillary earned a bachelor's degree with high honors in political science from the University of Michigan.
Email: <a href="mailto:hcrawford@nerdwallet.com">hcrawford@nerdwallet.com</a>.
Sally Lauckner has over a decade of experience in print and online journalism. Before joining NerdWallet, Sally was the editorial director at Fundera, where she built and led a team focused on small-business content. Her prior experience includes two years as a senior editor at SmartAsset, where she edited a wide range of personal finance content, and five years at the AOL Huffington Post Media Group, where she held a variety of editorial roles. She has a master's in journalism from New York University and a bachelor's in English and history from Columbia University. Email: slauckner@nerdwallet.com.
Sally Lauckner has over a decade of experience in print and online journalism. Before joining NerdWallet, Sally was the editorial director at Fundera, where she built and led a team focused on small-business content. Her prior experience includes two years as a senior editor at SmartAsset, where she edited a wide range of personal finance content, and five years at the AOL Huffington Post Media Group, where she held a variety of editorial roles. She has a master's in journalism from New York University and a bachelor's in English and history from Columbia University. Email: slauckner@nerdwallet.com.
NerdWallet's content is
fact-checked for accuracy, timeliness, and relevance by humans.
It undergoes a thorough review process involving writers and editors to ensure
the information is as clear and complete as possible. Learn more by checking
our
Editorial Guidelines.
Content was accurate at the time of publication.
Why trust NerdWallet
250+ small-business products reviewed and rated by our team of experts.
80+ years of combined experience covering small business and personal finance.
75+ categories of best business software selections.
NerdWallet's small-business software content, including ratings, recommendations and reviews, is overseen by a team of writers and editors who specialize in business software, including payroll, accounting and payment processing. Their work has appeared in The Associated Press, The Washington Post, Nasdaq, Entrepreneur, ABC News, Yahoo Finance and other national and local media outlets. Each writer and editor follows NerdWallet's strict guidelines for editorial integrity to ensure accuracy and fairness in our coverage.
Advertiser disclosure
You’re our first priority.
Every time.
We believe everyone should be able to make financial decisions with
confidence. And while our site doesn’t feature every company or
financial product available on the market, we’re proud that the guidance
we offer, the information we provide and the tools we create are
objective, independent, straightforward — and free.
So how do we make money? Our partners compensate us. This may influence
which products we review and write about (and where those products
appear on the site), but it in no way affects our recommendations or
advice, which are grounded in thousands of hours of research. Our
partners cannot pay us to guarantee favorable reviews of their products
or services. Here is a list of our partners .
Tools to build and host your website, plus the ability to accept online donations and tithes.
Donor database collects information like giving history and lets you create groups.
Fund accounting features for tracking how gifts, grants and donations are used.
Cons
Accounting features like budgeting and recurring transactions require a plan upgrade.
From its advent, Aplos software was designed for nonprofits and faith-based organizations. That means it comes with a wealth of features particular to the nonprofit sector, including customizable chart of accounts; fund tracking to efficiently keep tabs on grants and donations; a variety of reports to track accountability, such as fund-based balance sheets and income statements as well as contribution statements; as well as tools designed to encourage giving and track donations. With robust accounting features; tools related to fundraising, marketing and CRM; and optional add-on products for soliciting and receiving donations by text message, payroll and online bill payment, Aplos is a complete accounting and nonprofit management software solution.
Aplos
Best for Overall nonprofit accounting software
Starting at
$79/month
Additional pricing tiers (per month): $99, $189.
Promotion
15-day free trial
Pros
Designed for nonprofits and churches.
Tools to build and host your website, plus the ability to accept online donations and tithes.
Donor database collects information like giving history and lets you create groups.
Fund accounting features for tracking how gifts, grants and donations are used.
Cons
Accounting features like budgeting and recurring transactions require a plan upgrade.
From its advent, Aplos software was designed for nonprofits and faith-based organizations. That means it comes with a wealth of features particular to the nonprofit sector, including customizable chart of accounts; fund tracking to efficiently keep tabs on grants and donations; a variety of reports to track accountability, such as fund-based balance sheets and income statements as well as contribution statements; as well as tools designed to encourage giving and track donations. With robust accounting features; tools related to fundraising, marketing and CRM; and optional add-on products for soliciting and receiving donations by text message, payroll and online bill payment, Aplos is a complete accounting and nonprofit management software solution.
Feature set includes an excellent mobile app and suite of reports, capable invoicing features, plus automated bill and receipt capture through Hubdoc.
Simple layout and easy to use.
Cons
No inbound phone customer support (callbacks are available, though).
Entry-level plan limits bills and invoices to five and 20 per month, respectively.
Must subscribe to the highest-tier Established plan to claim expenses.
With more than 20 not-for-profit app integrations available, Xero is a user-friendly, scalable, cloud-based accounting software that can be customized to fit the needs of your nonprofit organization. Need to manage a membership base? Connect Xero with MembershipWorks. Need to track donations? You can link your Xero account to Infoodle for seamless donor communication and analysis. And even without integrating Xero with third-party software, you can manage your donor contacts directly in Xero’s built-in contact management tool. The feature allows you to view a record of all transactions with each contact, save documents relevant to each donor and include important notes to refer back to in the future.
Feature set includes an excellent mobile app and suite of reports, capable invoicing features, plus automated bill and receipt capture through Hubdoc.
Simple layout and easy to use.
Cons
No inbound phone customer support (callbacks are available, though).
Entry-level plan limits bills and invoices to five and 20 per month, respectively.
Must subscribe to the highest-tier Established plan to claim expenses.
With more than 20 not-for-profit app integrations available, Xero is a user-friendly, scalable, cloud-based accounting software that can be customized to fit the needs of your nonprofit organization. Need to manage a membership base? Connect Xero with MembershipWorks. Need to track donations? You can link your Xero account to Infoodle for seamless donor communication and analysis. And even without integrating Xero with third-party software, you can manage your donor contacts directly in Xero’s built-in contact management tool. The feature allows you to view a record of all transactions with each contact, save documents relevant to each donor and include important notes to refer back to in the future.
Easy to share information with your accountant and to find QuickBooks experts and online resources if needed.
More than 750 app integrations.
Robust feature set includes record-keeping, reporting, invoicing and inventory management, plus a capable mobile app.
Chat and phone support available Monday through Saturday in all plans.
Cons
Expensive compared with the competition.
Frequent price increases and a tendency toward upselling.
Limited account users with each plan.
QuickBooks is a mainstay in the realm of accounting software, and with several plan options for its cloud-based QuickBooks Online product, the software can grow with your nonprofit organization. It lacks some of the industry-specific reporting and features that nonprofit-specific software offers, but its desktop software cousin, QuickBooks Enterprise, offers those capabilities if your nonprofit outgrows the substantial features and functions of QuickBooks Online.
Easy to share information with your accountant and to find QuickBooks experts and online resources if needed.
More than 750 app integrations.
Robust feature set includes record-keeping, reporting, invoicing and inventory management, plus a capable mobile app.
Chat and phone support available Monday through Saturday in all plans.
Cons
Expensive compared with the competition.
Frequent price increases and a tendency toward upselling.
Limited account users with each plan.
QuickBooks is a mainstay in the realm of accounting software, and with several plan options for its cloud-based QuickBooks Online product, the software can grow with your nonprofit organization. It lacks some of the industry-specific reporting and features that nonprofit-specific software offers, but its desktop software cousin, QuickBooks Enterprise, offers those capabilities if your nonprofit outgrows the substantial features and functions of QuickBooks Online.
Less expensive than some competitors; free plan available for businesses with less than $50k in annual revenue.
Email support in free plan; phone and chat support in paid plans.
Rich feature set includes excellent invoicing, inventory management, workflow rules and a capable mobile app.
Add accounting widgets to your phone’s home screen; track time using your Apple Watch.
Cons
Fewer third-party integrations and reports than some competitors.
No plan includes more than 15 users (can add additional users for a fee).
Zoho Books is one of the few accounting software products that has a free plan, as well as five paid ones in case your nonprofit needs to scale up. Plus, it offers nonprofits 15% off paid plans, which can help make them more affordable. The downside is that, unlike other products on our list, Zoho Books doesn’t integrate directly with nonprofit-specific apps for managing donor databases and fundraising. However, if cost is your number one concern, it can be a good fit.
Less expensive than some competitors; free plan available for businesses with less than $50k in annual revenue.
Email support in free plan; phone and chat support in paid plans.
Rich feature set includes excellent invoicing, inventory management, workflow rules and a capable mobile app.
Add accounting widgets to your phone’s home screen; track time using your Apple Watch.
Cons
Fewer third-party integrations and reports than some competitors.
No plan includes more than 15 users (can add additional users for a fee).
Zoho Books is one of the few accounting software products that has a free plan, as well as five paid ones in case your nonprofit needs to scale up. Plus, it offers nonprofits 15% off paid plans, which can help make them more affordable. The downside is that, unlike other products on our list, Zoho Books doesn’t integrate directly with nonprofit-specific apps for managing donor databases and fundraising. However, if cost is your number one concern, it can be a good fit.
Automation features streamline grant, fund and billing processes.
Fund accounting features for tracking how donations and grants are used.
Cons
Lack of pricing transparency.
Not suitable for small nonprofits that don’t plan to grow.
The more you can automate your accounting tasks and business workflows, the more time you and your staff can dedicate to doing good in the world. Sage Intacct’s software comes with a number of automation features to simplify your nonprofit accounting and reporting, including an AI-powered general ledger and a revenue recognition tool that’s built to save you time and ensure your organization remains compliant. You may also appreciate Sage Intacct’s reporting and insights capabilities, in particular the digital board book the software can generate to visualize and present your organization’s impact and financial health to interested parties.
Automation features streamline grant, fund and billing processes.
Fund accounting features for tracking how donations and grants are used.
Cons
Lack of pricing transparency.
Not suitable for small nonprofits that don’t plan to grow.
The more you can automate your accounting tasks and business workflows, the more time you and your staff can dedicate to doing good in the world. Sage Intacct’s software comes with a number of automation features to simplify your nonprofit accounting and reporting, including an AI-powered general ledger and a revenue recognition tool that’s built to save you time and ensure your organization remains compliant. You may also appreciate Sage Intacct’s reporting and insights capabilities, in particular the digital board book the software can generate to visualize and present your organization’s impact and financial health to interested parties.
Annual subscriptions are expensive; each additional user license and cloud access costs extra.
QuickBooks Enterprise is a general accounting solution, but it still includes certain industry-specific features, like a nonprofit chart of accounts that shows your organization’s assets, expenses and revenue from both donations and retail sales. At tax time, you can easily transfer your data to the relevant IRS forms. Customizable reports allow you to manage budgets for various programs, view contributions by donor and track top-tier donors. QuickBooks Enterprise is desktop software, but users can pay more for cloud access.
Annual subscriptions are expensive; each additional user license and cloud access costs extra.
QuickBooks Enterprise is a general accounting solution, but it still includes certain industry-specific features, like a nonprofit chart of accounts that shows your organization’s assets, expenses and revenue from both donations and retail sales. At tax time, you can easily transfer your data to the relevant IRS forms. Customizable reports allow you to manage budgets for various programs, view contributions by donor and track top-tier donors. QuickBooks Enterprise is desktop software, but users can pay more for cloud access.
Built specifically for nonprofits and government agencies.
Fund accounting features for tracking how donations and grants are used.
Built-in human resources management system for payroll, benefits, time tracking and more.
Web payment module lets you accept donations online.
Cons
Lack of pricing transparency.
If you run a more established nonprofit with a large employee base, then you may need software to help you manage not only your organization’s finances but your employees as well. AccuFund’s core software includes general accounting functions such as bank reconciliation, a general ledger, financial reporting and dashboards and accounts payable. Additionally, AccuFund offers add-on modules and products to round out the solution you need for your particular nonprofit. The company’s robust HR management product includes payroll, tax management, time tracking, employee self-service portal and additional tools.
AccuFund
Best for Nonprofit HR management features
Promotion
N/A
Pros
Built specifically for nonprofits and government agencies.
Fund accounting features for tracking how donations and grants are used.
Built-in human resources management system for payroll, benefits, time tracking and more.
Web payment module lets you accept donations online.
Cons
Lack of pricing transparency.
If you run a more established nonprofit with a large employee base, then you may need software to help you manage not only your organization’s finances but your employees as well. AccuFund’s core software includes general accounting functions such as bank reconciliation, a general ledger, financial reporting and dashboards and accounts payable. Additionally, AccuFund offers add-on modules and products to round out the solution you need for your particular nonprofit. The company’s robust HR management product includes payroll, tax management, time tracking, employee self-service portal and additional tools.
Jump to
What is nonprofit accounting software?
Nonprofit accounting software is a bookkeeping program tailored to the needs of tax-exempt organizations. In addition to the basic functions of standard accounting software, it typically offers fund accounting — a method that monitors how donations are used — as well as capabilities like Form 990 filing, fundraising tools and a system for communicating with donors.
These features may be available in more universal products. For instance, tracking donations in QuickBooks is possible through workarounds, but not as straightforward as with a product built for nonprofits. If you choose to use regular accounting software, make sure you can integrate with an app like Donor Receipts or Kindful that provides nonprofit-specific tools.
How to choose nonprofit accounting software
Consider cost, ease of use and must-have features to choose the best accounting software for your nonprofit. Pay particularly close attention to the following:
CRM functions that let you track, analyze and engage a large donor or membership base.
Tools for easily accepting online donations.
The ability to budget by fund, project and/or tag.
Automated reporting for IRS Form 990.
Grant management features to meet time and use restrictions.
Ultimately, you’ll want to balance the features you need alongside your budget and whether the software checks other boxes, like scalability. Your nonprofit accounting software should accommodate your nonprofit today and down the road if it grows.
NerdWallet writer Kelsey Sheehy contributed to this article.
Last updated on October 25, 2024
Methodology
NerdWallet independently reviews accounting software products before determining our top picks. We collect the data for our software ratings from products’ public-facing websites and from company representatives. Information is gathered on a regular basis and reviewed by our editorial team for consistency and accuracy.
NerdWallet’s accounting software ratings favor products that are easy to use, reasonably priced, have a robust feature set and can grow with your business. The best accounting software received top marks when evaluated across 10 categories and more than 30 subcategories. Learn more about how we rate small-business accounting software.
These ratings are meant to provide clarity in the decision-making process, but what’s best for your business will depend on its size, growth trajectory and which features you need most. We encourage you to research and compare multiple accounting software products before choosing one.
NerdWallet does not receive compensation for any reviews. Read our editorial guidelines.
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