Best Accounting Software for Nonprofits
Product | Best for | NerdWallet rating | Starting at | Promotion | Learn more |
---|---|---|---|---|---|
![]() Aplos | Overall nonprofit accounting software | $79/month Additional pricing tiers (per month): $99, $189. | 15-day free trial | ||
on Xero's secure website | Donor contact management | $20/month Additional pricing tiers (per month): $47, $80. | 90% off for 6 months. | on Xero's secure website | |
on QuickBooks Online's secure website | Scalable accounting software for nonprofits | $38/month Additional pricing tiers (per month): $75, $115, $275. | 90% off for first three months or free 30-day trial. | on QuickBooks Online's secure website | |
on Zoho Books' secure website | Budget accounting software for nonprofits | $0 Additional pricing tiers (per month): $20, $50, $70, $150, $275. | 14-day free trial of the Premium plan. | on Zoho Books' secure website | |
on Sage Intacct's secure website | Nonprofit accounting automation tools | N/A | N/A | on Sage Intacct's secure website | |
on QuickBooks Enterprise's secure website | Enterprise nonprofit accounting software | $1,703/year Additional pricing tiers (per year): $2,210; $2,717; $5,364. Adding users or cloud access costs extra. | 30-day free trial | on QuickBooks Enterprise's secure website | |
![]() AccuFund | Nonprofit HR management features | N/A | N/A |
Best Accounting Software for Nonprofits

Additional pricing tiers (per month): $99, $189.
Pros
- Designed for nonprofits and churches.
- Tools to build and host your website, plus the ability to accept online donations and tithes.
- Donor database collects information like giving history and lets you create groups.
- Fund accounting features for tracking how gifts, grants and donations are used.
Cons
- Accounting features like budgeting and recurring transactions require a plan upgrade.
Aplos

Best for Overall nonprofit accounting software
Additional pricing tiers (per month): $99, $189.
Pros
- Designed for nonprofits and churches.
- Tools to build and host your website, plus the ability to accept online donations and tithes.
- Donor database collects information like giving history and lets you create groups.
- Fund accounting features for tracking how gifts, grants and donations are used.
Cons
- Accounting features like budgeting and recurring transactions require a plan upgrade.
Additional pricing tiers (per month): $47, $80.
for 6 months.
on Xero's website
Pros
- Unlimited users in all pricing plans.
- Integrates with more than 1,000 third-party apps.
- Feature set includes an excellent mobile app and suite of reports, capable invoicing features, plus automated bill and receipt capture through Hubdoc.
- Simple layout and easy to use.
Cons
- No inbound phone customer support (callbacks are available, though).
- Entry-level plan limits bills and invoices to five and 20 per month, respectively.
- Must subscribe to the highest-tier Established plan to claim expenses.
Xero
Best for Donor contact management
Additional pricing tiers (per month): $47, $80.
for 6 months.
on Xero's website
Pros
- Unlimited users in all pricing plans.
- Integrates with more than 1,000 third-party apps.
- Feature set includes an excellent mobile app and suite of reports, capable invoicing features, plus automated bill and receipt capture through Hubdoc.
- Simple layout and easy to use.
Cons
- No inbound phone customer support (callbacks are available, though).
- Entry-level plan limits bills and invoices to five and 20 per month, respectively.
- Must subscribe to the highest-tier Established plan to claim expenses.
Additional pricing tiers (per month): $75, $115, $275.
for first three months or free 30-day trial.
on QuickBooks' website
Pros
- Easy to share information with your accountant and to find QuickBooks experts and online resources if needed.
- More than 750 app integrations.
- Robust feature set includes record-keeping, reporting, invoicing and inventory management, plus a capable mobile app.
- Chat and phone support available Monday through Saturday in all plans.
Cons
- Expensive compared with the competition.
- Frequent price increases and a tendency toward upselling.
- Limited account users with each plan.
QuickBooks Online
Best for Scalable accounting software for nonprofits
Additional pricing tiers (per month): $75, $115, $275.
for first three months or free 30-day trial.
on QuickBooks' website
Pros
- Easy to share information with your accountant and to find QuickBooks experts and online resources if needed.
- More than 750 app integrations.
- Robust feature set includes record-keeping, reporting, invoicing and inventory management, plus a capable mobile app.
- Chat and phone support available Monday through Saturday in all plans.
Cons
- Expensive compared with the competition.
- Frequent price increases and a tendency toward upselling.
- Limited account users with each plan.
Additional pricing tiers (per month): $20, $50, $70, $150, $275.
of the Premium plan.
on Zoho Books' website
Pros
- Less expensive than some competitors; free plan available for businesses with less than $50k in annual revenue.
- Email support in free plan; phone and chat support in paid plans.
- Rich feature set includes excellent invoicing, inventory management, workflow rules and a capable mobile app.
- Add accounting widgets to your phone’s home screen; track time using your Apple Watch.
Cons
- Fewer third-party integrations and reports than some competitors.
- No plan includes more than 15 users (can add additional users for a fee).
Zoho Books
Best for Budget accounting software for nonprofits
Additional pricing tiers (per month): $20, $50, $70, $150, $275.
of the Premium plan.
on Zoho Books' website
Pros
- Less expensive than some competitors; free plan available for businesses with less than $50k in annual revenue.
- Email support in free plan; phone and chat support in paid plans.
- Rich feature set includes excellent invoicing, inventory management, workflow rules and a capable mobile app.
- Add accounting widgets to your phone’s home screen; track time using your Apple Watch.
Cons
- Fewer third-party integrations and reports than some competitors.
- No plan includes more than 15 users (can add additional users for a fee).
Pros
- Manage grant budgets.
- Revenue recognition tool helps nonprofits stay compliant.
- Automation features streamline grant, fund and billing processes.
- Fund accounting features for tracking how donations and grants are used.
Cons
- Lack of pricing transparency.
- Not suitable for small nonprofits that don’t plan to grow.
Pros
- Manage grant budgets.
- Revenue recognition tool helps nonprofits stay compliant.
- Automation features streamline grant, fund and billing processes.
- Fund accounting features for tracking how donations and grants are used.
Cons
- Lack of pricing transparency.
- Not suitable for small nonprofits that don’t plan to grow.
Additional pricing tiers (per year): $2,210; $2,717; $5,364. Adding users or cloud access costs extra.
on QuickBooks' website
Pros
- Strong feature set includes thorough record-keeping, invoicing and advanced inventory management and pricing rules.
- More than 200 reports, including industry-specific options for various industries.
- 24/7 phone and chat support.
Cons
- Limited direct, third-party software integrations.
- Annual subscriptions are expensive; each additional user license and cloud access costs extra.
QuickBooks Enterprise
Best for Enterprise nonprofit accounting software
Additional pricing tiers (per year): $2,210; $2,717; $5,364. Adding users or cloud access costs extra.
on QuickBooks' website
Pros
- Strong feature set includes thorough record-keeping, invoicing and advanced inventory management and pricing rules.
- More than 200 reports, including industry-specific options for various industries.
- 24/7 phone and chat support.
Cons
- Limited direct, third-party software integrations.
- Annual subscriptions are expensive; each additional user license and cloud access costs extra.

Pros
- Built specifically for nonprofits and government agencies.
- Fund accounting features for tracking how donations and grants are used.
- Built-in human resources management system for payroll, benefits, time tracking and more.
- Web payment module lets you accept donations online.
Cons
- Lack of pricing transparency.
AccuFund

Best for Nonprofit HR management features
Pros
- Built specifically for nonprofits and government agencies.
- Fund accounting features for tracking how donations and grants are used.
- Built-in human resources management system for payroll, benefits, time tracking and more.
- Web payment module lets you accept donations online.
Cons
- Lack of pricing transparency.
What is nonprofit accounting software?
How to choose nonprofit accounting software
- CRM functions that let you track, analyze and engage a large donor or membership base.
- Tools for easily accepting online donations.
- The ability to budget by fund, project and/or tag.
- Automated reporting for IRS Form 990.
- Grant management features to meet time and use restrictions.